About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18851COPINE
HS18852
HS18853MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS18854
HS18855
HS18856
HS18857GBP PROTEIN
HS18858DEK PROTEIN
HS18859GUANYLYL CYCLASE
HS18860ZINC FINGER AND BTB DOMAIN-CONTAINING
HS18861CALCIUM-TRANSPORTING ATPASE
HS18862CALPAIN, SMALL SUBUNIT 1 A-RELATED
HS18863UNCHARACTERIZED
HS18864SI:CH211-266K2.1
HS18865RETROTRANSPOSON
HS18866CD83 ANTIGEN
HS18867PROTEIN C8ORF37
HS18868WD REPEAT-CONTAINING PROTEIN 73
HS18869PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED
HS18870
HS18871-
HS18872N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS18873N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS18874DIABETES AND OBESITY REGULATED, ISOFORM G
HS18875AGGRECAN/VERSICAN PROTEOGLYCAN
HS18876CYCLINS
HS18877RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
HS18878AGGRECAN/VERSICAN PROTEOGLYCAN
HS18879AMMONIUM TRANSPORTER
HS18880
HS18881NESTIN
HS18882CALPAIN-7
HS18883
HS18884C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
HS18885METHYLTRANSFERASE-RELATED
HS18886ELL-ASSOCIATED FACTOR EAF
HS18887CROSSVEINLESS 2
HS18888PARATHYROID HORMONE-RESPONSIVE B1 GENE
HS18889PARATHYROID HORMONE-RESPONSIVE B1 GENE
HS18890
HS18891AGL056WP
HS18892
HS18893AUTOPHAGY PROTEIN 5
HS18894PR DOMAIN ZINC FINGER PROTEIN
HS18895S100 CALCIUM-BINDING PROTEIN
HS18896TOLL-LIKE RECEPTOR
HS18897REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18898SEMAPHORIN
HS18899SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS18900CYSTEINE PROTEASE FAMILY C1-RELATED
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