About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57553BONUS, ISOFORM C-RELATED
Paelopatides57554-
Paelopatides57555BONUS, ISOFORM C-RELATED
Paelopatides57556REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57557REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57558BONUS, ISOFORM C-RELATED
Paelopatides57559GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides57560GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides57561FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides57562ZGC:195170
Paelopatides57563-
Paelopatides57564LARGE PROLINE-RICH PROTEIN BAG6
Paelopatides57565PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Paelopatides57566-
Paelopatides57567PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Paelopatides57568SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Paelopatides57570ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
Paelopatides57571SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57573AGAP008170-PA
Paelopatides57574PARTNER OF BURSICON
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