About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00518GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides00519PROTEIN CBG26694
Paelopatides00520ENDONUCLEASE-RELATED
Paelopatides00521TRANSPOSABLE ELEMENT-RELATED
Paelopatides00522MULTICOPPER OXIDASE-RELATED
Paelopatides00523UNCHARACTERIZED
Paelopatides00524REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00525AP COMPLEX SUBUNIT MU
Paelopatides00526PROTEIN CBG26694
Paelopatides00527-
Paelopatides00528AP COMPLEX SUBUNIT MU
Paelopatides00529ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00530ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides00531-
Paelopatides00532-
Paelopatides00533ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides00534TRANSPOSON
Paelopatides00535ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00536CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00537SOLUTE CARRIER FAMILY 2
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