About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00478PROTEIN CBG26694
Paelopatides00479PROTEIN CBG26694
Paelopatides00480ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides00481ATP-DEPENDENT DNA HELICASE
Paelopatides00482ARYLSULFATASE FAMILY MEMBER
Paelopatides00483-
Paelopatides00484TYROSINE-PROTEIN KINASE
Paelopatides00485REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00486NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides00487-
Paelopatides00488REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00489EPM2A-INTERACTING PROTEIN 1
Paelopatides00490-
Paelopatides00491NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides00492PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
Paelopatides00493OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides00494STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
Paelopatides00495-
Paelopatides00496PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides00497-
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