About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00558VERY KIND PROTEIN
Paelopatides00559VERY KIND PROTEIN
Paelopatides00560PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER
Paelopatides00561-
Paelopatides00562FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides00563-
Paelopatides00564ENDONUCLEASE-RELATED
Paelopatides00565POL PROTEIN
Paelopatides00566L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides00567SPHINGOSINE KINASE
Paelopatides00568REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00569TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Paelopatides00570TUBULIN
Paelopatides00571DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Paelopatides00572NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT
Paelopatides00573-
Paelopatides00574UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides00575-
Paelopatides00576-
Paelopatides00577GH10160P
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