About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00578-
Paelopatides00579NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides00580PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides00581TOLL-LIKE RECEPTOR
Paelopatides00582DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides00583RETROTRANSPOSON
Paelopatides00584PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides00585PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides00586-
Paelopatides00587-
Paelopatides00588-
Paelopatides00589ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides00590ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00591L-ASPARAGINASE
Paelopatides00592DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides00593MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides00594MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides00595-
Paelopatides00596RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides00597NETRIN RECEPTOR UNC5
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