About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00640-
Paelopatides00641-
Paelopatides00642-
Paelopatides00643-
Paelopatides00644TRANSPOSON
Paelopatides00645-
Paelopatides00646C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Paelopatides00647-
Paelopatides00648DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides00649CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00650-
Paelopatides00651-
Paelopatides00652ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00653BONUS, ISOFORM C-RELATED
Paelopatides00654D-GLUTAMATE CYCLASE, MITOCHONDRIAL
Paelopatides00656-
Paelopatides00657ENZYMATIC POLYPROTEIN-RELATED
Paelopatides00658RABIN3-RELATED
Paelopatides00659PINSTRIPE, ISOFORM A
Paelopatides00660PINSTRIPE, ISOFORM A
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