Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG04120.1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| RPACG04121.1 | PWWP DOMAIN-CONTAINING DNA REPAIR FACTOR 3 FAMILY MEMBER |
| RPACG04122.1 | UBIQUILIN |
| RPACG04123.1 | MATING RESPONSE PROTEIN POI2 |
| RPACG04124.1 | MYB-LIKE PROTEIN V |
| RPACG04125.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
| RPACG04126.1 | CHLORIDE CHANNEL PROTEIN |
| RPACG04127.1 | GEO05313P1 |
| RPACG04128.1 | PROTEIN INTURNED |
| RPACG04129.1 | LIPOXYGENASE |
| RPACG04130.1 | HSC70-INTERACTING PROTEIN |
| RPACG04131.1 | TRANSMEMBRANE GTPASE FZO |
| RPACG04132.1 | HSC70-INTERACTING PROTEIN |
| RPACG04132.2 | - |
| RPACG04132.3 | - |
| RPACG04133.1 | XAA-PRO AMINOPEPTIDASE 3 |
| RPACG04134.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| RPACG04135.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| RPACG04136.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| RPACG04137.1 | - |
