About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10475.1
RPACG10475.2
RPACG10476.1
RPACG10477.1
RPACG10478.1
RPACG10478.2
RPACG10479.1
RPACG10480.1
RPACG10481.1
RPACG10482.1
RPACG10483.1
RPACG10484.1
RPACG10485.1DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
RPACG10486.1GLUTAREDOXIN FAMILY MEMBER
RPACG10487.1
RPACG10488.1RING ZINC FINGER PROTEIN
RPACG10489.1GENERAL VESICULAR TRANSPORT FACTOR P115
RPACG10490.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG10491.1
RPACG10492.1MYB-LIKE PROTEIN V
RPACG10493.1
RPACG10494.1
RPACG10494.2
RPACG10495.1
RPACG10496.1
RPACG10497.1-
RPACG10498.1
RPACG10499.1
RPACG10500.1GABA-B RECEPTOR
RPACG10501.1GABA-B RECEPTOR
RPACG10502.1GABA-B RECEPTOR
RPACG10503.1GABA-B RECEPTOR
RPACG10504.1
RPACG10505.1
RPACG10506.1
RPACG10507.1
RPACG10508.1
RPACG10508.2
RPACG10509.1UNCHARACTERIZED
RPACG10510.1UNCHARACTERIZED
RPACG10511.1GENE 5901-RELATED
RPACG10512.1METHYLTRANSFERASE LIKE 7B
RPACG10513.1CALCIUM BINDING PROTEIN
RPACG10514.1BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
RPACG10515.1EF HAND DOMAIN FAMILY A1,A2-RELATED
RPACG10516.1FIBROBLAST GROWTH FACTOR
RPACG10517.1
RPACG10518.1
RPACG10519.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG10520.1VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
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