About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

<< First 233 234 235 236 237 238 239 240 241 242 Forward> Last>>        604 pages in total

Gene IDDescription
RPACG10520.2
RPACG10521.1RCG42593, ISOFORM CRA_A
RPACG10522.1KINASE D-INTERACTING SUBSTRATE OF 220 KDA
RPACG10523.1
RPACG10524.1TRANSLATION INITIATION FACTOR IF-2-RELATED
RPACG10525.1
RPACG10526.1
RPACG10526.2
RPACG10527.1
RPACG10528.1
RPACG10529.1
RPACG10530.1SPROUTY
RPACG10531.1
RPACG10532.1
RPACG10533.1TOL-PAL SYSTEM PROTEIN TOLA
RPACG10533.2
RPACG10534.1
RPACG10535.1
RPACG10536.1
RPACG10537.1NEDD4 FAMILY INTERACTING PROTEIN 1/2
RPACG10538.1AGAP001705-PA
RPACG10539.1
RPACG10540.1FIP1-LIKE 1 PROTEIN
RPACG10541.1TRANSLATION INITIATION FACTOR IF-3
RPACG10542.1PIRNA BIOGENESIS PROTEIN EXD1
RPACG10543.1
RPACG10544.1
RPACG10545.1
RPACG10546.1
RPACG10547.1
RPACG10548.1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
RPACG10549.1
RPACG10549.2
RPACG10549.3
RPACG10550.1
RPACG10551.1
RPACG10551.2
RPACG10552.1
RPACG10553.1MITOCHONDRIA-EATING PROTEIN-RELATED
RPACG10553.2
RPACG10554.1
RPACG10555.1
RPACG10556.1MYOSIN HEAVY CHAIN, NON-MUSCLE
RPACG10557.1CAMK FAMILY PROTEIN KINASE
RPACG10558.1GTP-BINDING PROTEIN 8
RPACG10559.1SERINE-THREONINE PROTEIN KINASE
RPACG10560.1
RPACG10561.1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
RPACG10562.1
RPACG10563.1
TOP