About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10344.1
RPACG10345.1
RPACG10346.1
RPACG10347.1
RPACG10348.1
RPACG10349.1
RPACG10350.1
RPACG10351.1
RPACG10352.1
RPACG10353.1
RPACG10354.1
RPACG10354.2
RPACG10355.1
RPACG10356.1
RPACG10357.1
RPACG10357.2
RPACG10358.1
RPACG10359.1
RPACG10360.1
RPACG10361.1
RPACG10362.1
RPACG10363.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
RPACG10364.1UNCHARACTERIZED
RPACG10364.2
RPACG10364.3
RPACG10364.4
RPACG10365.1METAL DEPENDENT HYDROLASE - RELATED
RPACG10366.1METAL DEPENDENT HYDROLASE - RELATED
RPACG10367.1RYANODINE RECEPTOR AND IP3 RECEPTOR
RPACG10368.1
RPACG10369.1RYANODINE RECEPTOR AND IP3 RECEPTOR
RPACG10370.1
RPACG10371.1NEUROPEPTIDE-LIKE PROTEIN-RELATED
RPACG10372.1
RPACG10373.1NEUROPEPTIDE-LIKE PROTEIN-RELATED
RPACG10374.1
RPACG10375.1
RPACG10376.1RYANODINE RECEPTOR AND IP3 RECEPTOR
RPACG10377.1EXS-RELATED PROTEIN
RPACG10378.1RYANODINE RECEPTOR AND IP3 RECEPTOR
RPACG10379.1
RPACG10380.1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
RPACG10381.1PROFILIN
RPACG10382.1
RPACG10383.1
RPACG10384.1
RPACG10385.1
RPACG10386.1
RPACG10387.1
RPACG10388.1MONOCARBOXYLATE TRANSPORTER
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