About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10158.1
RPACG10159.1
RPACG10160.1
RPACG10161.1MYB-LIKE PROTEIN V
RPACG10162.1
RPACG10163.15-HYDROXYTRYPTAMINE RECEPTOR
RPACG10164.1
RPACG10165.1
RPACG10166.1
RPACG10167.1
RPACG10168.1
RPACG10169.1T-BOX PROTEIN-RELATED
RPACG10170.1
RPACG10171.1
RPACG10172.1
RPACG10173.1MYOSIN REGULATORY LIGHT CHAIN 2
RPACG10174.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG10175.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG10176.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG10177.1-
RPACG10178.1
RPACG10179.1-
RPACG10180.1
RPACG10181.1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
RPACG10181.2
RPACG10182.1
RPACG10183.1
RPACG10184.1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
RPACG10185.1ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
RPACG10186.1BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN
RPACG10187.1
RPACG10188.1
RPACG10189.1
RPACG10190.1
RPACG10191.1
RPACG10192.1
RPACG10193.1PLASMINOGEN-RELATED
RPACG10193.2
RPACG10194.1
RPACG10195.1
RPACG10195.2
RPACG10196.1
RPACG10197.1PLASMINOGEN-RELATED
RPACG10197.2
RPACG10197.3
RPACG10198.1
RPACG10199.1PLASMINOGEN-RELATED
RPACG10200.1
RPACG10201.1
RPACG10202.1
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