About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG09896.1
RPACG09897.1
RPACG09897.2
RPACG09898.1
RPACG09899.1
RPACG09900.1
RPACG09901.1
RPACG09902.1
RPACG09903.1SPECKLE-TYPE POZ PROTEIN
RPACG09904.1UNCHARACTERIZED
RPACG09905.1DDRGK DOMAIN-CONTAINING PROTEIN 1
RPACG09905.2
RPACG09906.1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
RPACG09907.1YIPPEE DOMAIN-CONTAINING PROTEIN
RPACG09907.2
RPACG09908.1GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN PFC0235W
RPACG09908.2
RPACG09909.1ASPARTYL-TRNA SYNTHETASE
RPACG09910.1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
RPACG09911.1DYNEIN REGULATORY COMPLEX PROTEIN 9
RPACG09912.1COATOMER
RPACG09913.1BETA-MANNOSIDASE
RPACG09914.1ZINC PHOSPHODIESTERASE ELAC PROTEIN 1
RPACG09915.1
RPACG09916.1
RPACG09917.1
RPACG09918.1CHROMOSOME 20 ORF85 FAMILY MEMBER
RPACG09919.1
RPACG09920.1ABHYDROLASE DOMAIN-CONTAINING PROTEIN
RPACG09921.1CYSTEINE PROTEASE FAMILY C1-RELATED
RPACG09922.1
RPACG09923.1NICOTINATE PHOSPHORIBOSYLTRANSFERASE
RPACG09924.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG09925.1
RPACG09926.1
RPACG09927.1
RPACG09928.1
RPACG09929.1
RPACG09930.1
RPACG09930.2
RPACG09931.1
RPACG09932.1
RPACG09933.1
RPACG09934.1
RPACG09935.1
RPACG09936.1
RPACG09937.1
RPACG09938.1
RPACG09939.1
RPACG09940.1
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