About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG09851.1
RPACG09852.1
RPACG09853.1
RPACG09854.1
RPACG09855.1TRANSMEMBRANE CHANNEL-RELATED
RPACG09856.1
RPACG09857.1
RPACG09858.1
RPACG09859.1
RPACG09860.1PROTEASOME SUBUNIT ALPHA/BETA
RPACG09861.1TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C
RPACG09862.1SYNAPTOSOMAL ASSOCIATED PROTEIN
RPACG09863.1DIACYLGLYCEROL KINASE
RPACG09864.1MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE
RPACG09864.2
RPACG09864.3
RPACG09864.4
RPACG09865.1
RPACG09866.1DEOXYRIBONUCLEASE
RPACG09867.1DEOXYRIBONUCLEASE
RPACG09868.1
RPACG09869.126 PROTEASOME COMPLEX SUBUNIT DSS1
RPACG09870.1JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1
RPACG09871.1ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL
RPACG09872.1CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3
RPACG09872.2
RPACG09873.1
RPACG09874.1CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
RPACG09875.1UNCHARACTERIZED
RPACG09876.1LITHOSTATHINE
RPACG09877.1
RPACG09877.2
RPACG09878.1
RPACG09879.1TIPA
RPACG09880.1
RPACG09881.1
RPACG09882.1FMRFAMIDE RECEPTOR-RELATED
RPACG09883.1POTE ANKYRIN DOMAIN
RPACG09884.1
RPACG09885.1
RPACG09886.1
RPACG09887.1
RPACG09888.1
RPACG09889.1
RPACG09890.1
RPACG09891.1
RPACG09892.1
RPACG09893.1
RPACG09894.1
RPACG09895.1
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