About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10116.2
RPACG10117.1
RPACG10118.1
RPACG10119.1
RPACG10119.2
RPACG10120.1
RPACG10120.2
RPACG10121.1
RPACG10122.1
RPACG10123.1FUKUTIN RELATED PROTEIN
RPACG10124.1-
RPACG10125.1
RPACG10126.1
RPACG10127.1
RPACG10127.2
RPACG10128.1MYOSIN
RPACG10129.1MEVALONATE KINASE
RPACG10130.1APOPTOSIS-INDUCING FACTOR 1
RPACG10131.1
RPACG10132.1
RPACG10133.1
RPACG10134.1
RPACG10135.1
RPACG10136.1
RPACG10137.1SOLUTE CARRIER FAMILY 13 MEMBER
RPACG10138.1MICROSOMAL GLUTATHIONE S-TRANSFERASE
RPACG10139.1MICROSOMAL GLUTATHIONE S-TRANSFERASE
RPACG10140.1MICROSOMAL GLUTATHIONE S-TRANSFERASE
RPACG10141.1INOSITOL 5-PHOSPHATASE
RPACG10142.1DYNEIN HEAVY CHAIN FAMILY PROTEIN
RPACG10143.1UNCHARACTERIZED
RPACG10144.1MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG
RPACG10144.2
RPACG10145.1HIGH-AFFINITY CHOLINE TRANSPORTER 1
RPACG10146.1SERINE/THREONINE-PROTEIN KINASE
RPACG10147.1SRR1-LIKE PROTEIN
RPACG10148.1
RPACG10149.1
RPACG10150.1
RPACG10151.1SOLUTE CARRIER FAMILY 13 MEMBER
RPACG10151.2
RPACG10152.1D-DOPACHROME DECARBOXYLASE
RPACG10153.1SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL
RPACG10154.1MUCIN-22
RPACG10155.1MUCIN-22
RPACG10156.1MUCIN-22
RPACG10157.1BLR2807 PROTEIN
RPACG10157.2
RPACG10157.3
RPACG10157.4
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