About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10436.1
RPACG10437.1-
RPACG10438.1
RPACG10439.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG10439.2
RPACG10440.1
RPACG10440.2
RPACG10441.1
RPACG10442.1
RPACG10443.1
RPACG10444.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG10445.1
RPACG10445.2
RPACG10445.3
RPACG10445.4
RPACG10446.1RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
RPACG10447.1PHYTOENE DEHYDROGENASE
RPACG10447.2
RPACG10448.1
RPACG10449.1
RPACG10450.1UNCHARACTERIZED
RPACG10451.1FMRFAMIDE RECEPTOR-RELATED
RPACG10452.1FMRFAMIDE RECEPTOR-RELATED
RPACG10453.1-
RPACG10454.1RIBOSE-5-PHOSPHATE ISOMERASE
RPACG10454.2
RPACG10455.1VACUOLAR ATP SYNTHASE SUBUNIT H
RPACG10456.1DDB1- AND CUL4-ASSOCIATED FACTOR 10
RPACG10457.1
RPACG10458.1
RPACG10459.1AGAP008228-PA
RPACG10460.1AGAP008228-PA
RPACG10460.2
RPACG10460.3
RPACG10461.1ALPHA CATENIN
RPACG10462.1
RPACG10463.1
RPACG10464.1
RPACG10464.2
RPACG10465.1
RPACG10466.1
RPACG10467.1
RPACG10468.1ADULT RETINA PROTEIN
RPACG10469.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG10470.1
RPACG10471.1
RPACG10472.1
RPACG10472.2
RPACG10473.1DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
RPACG10474.1
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