Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g1101.t1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Lsat_s001.g1102.t1 | SLR0848 PROTEIN |
| Lsat_s001.g1103.t1 | |
| Lsat_s001.g1104.t1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
| Lsat_s001.g1105.t1 | |
| Lsat_s001.g1106.t1 | SOLUTE CARRIER FAMILY 17 |
| Lsat_s001.g1107.t1 | NARDILYSIN |
| Lsat_s001.g1108.t1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| Lsat_s001.g1109.t1 | HISTONE DEACETYLASE HDAC1-RELATED |
| Lsat_s001.g1110.t1 | DNA EXCISION REPAIR PROTEIN ERCC-8 |
| Lsat_s001.g1111.t1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
| Lsat_s001.g1112.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s001.g1113.t1 | |
| Lsat_s001.g1114.t1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
| Lsat_s001.g1115.t1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| Lsat_s001.g1116.t1 | PROTEIN OF UNKNOWN FUNCTION DUF729 |
| Lsat_s001.g1117.t1 | NADH-CYTOCHROME B5 REDUCTASE |
| Lsat_s001.g1118.t1 | |
| Lsat_s001.g1119.t1 | |
| Lsat_s001.g1120.t1 | MIDNOLIN |
| Lsat_s001.g1121.t1 | |
| Lsat_s001.g1122.t1 | HILLARIN |
| Lsat_s001.g1123.t1 | |
| Lsat_s001.g1124.t1 | HILLARIN |
| Lsat_s001.g1125.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s001.g1126.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s001.g1127.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s001.g1128.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s001.g1129.t1 | |
| Lsat_s001.g1130.t1 | CYTOCHROME C OXIDASE SUBUNIT 6C |
| Lsat_s001.g1131.t1 | |
| Lsat_s001.g1132.t1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
| Lsat_s001.g1133.t1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
| Lsat_s001.g1134.t1 | |
| Lsat_s001.g1135.t1 | |
| Lsat_s001.g1136.t1 | |
| Lsat_s001.g1137.t1 | |
| Lsat_s001.g1138.t1 | |
| Lsat_s001.g1139.t1 | PHOSPHATIDYLINOSITOL GLYCAN-RELATED |
| Lsat_s001.g1140.t1 | ZINC FINGER, ZZ TYPE |
| Lsat_s001.g1141.t1 | F-BOX/TPR REPEAT PROTEIN POF3 |
| Lsat_s001.g1142.t1 | CYTOCHROME C1 HEME LYASE |
| Lsat_s001.g1143.t1 | |
| Lsat_s001.g1144.t1 | CYTOCHROME C1 HEME LYASE |
| Lsat_s001.g1145.t1 | |
| Lsat_s001.g1146.t1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
| Lsat_s001.g1147.t1 | |
| Lsat_s001.g1148.t1 | N6-ADENOSINE-METHYLTRANSFERASE |
| Lsat_s001.g1149.t1 | |
| Lsat_s001.g1150.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
