Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g0901.t1 | |
| Lsat_s001.g0902.t1 | |
| Lsat_s001.g0903.t1 | |
| Lsat_s001.g0904.t1 | |
| Lsat_s001.g0905.t1 | |
| Lsat_s001.g0906.t1 | |
| Lsat_s001.g0907.t1 | |
| Lsat_s001.g0908.t1 | |
| Lsat_s001.g0909.t1 | THIOPURINE S-METHYLTRANSFERASE |
| Lsat_s001.g0910.t1 | AAA DOMAIN-CONTAINING |
| Lsat_s001.g0911.t1 | |
| Lsat_s001.g0912.t1 | |
| Lsat_s001.g0913.t1 | |
| Lsat_s001.g0914.t1 | |
| Lsat_s001.g0915.t1 | |
| Lsat_s001.g0916.t1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| Lsat_s001.g0917.t1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| Lsat_s001.g0918.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
| Lsat_s001.g0919.t1 | EG:EG0003.4 PROTEIN-RELATED |
| Lsat_s001.g0920.t1 | OS02G0815200 PROTEIN |
| Lsat_s001.g0921.t1 | DIPHTHINE SYNTHASE |
| Lsat_s001.g0922.t1 | |
| Lsat_s001.g0923.t1 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
| Lsat_s001.g0924.t1 | LIPID PHOSPHATE PHOSPHATASE |
| Lsat_s001.g0925.t1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0926.t1 | PROTEIN PET100 HOMOLOG, MITOCHONDRIAL |
| Lsat_s001.g0927.t1 | PROTEIN PET100 HOMOLOG, MITOCHONDRIAL |
| Lsat_s001.g0928.t1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| Lsat_s001.g0929.t1 | PNAS-3 RELATED |
| Lsat_s001.g0930.t1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Lsat_s001.g0931.t1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| Lsat_s001.g0932.t1 | |
| Lsat_s001.g0933.t1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Lsat_s001.g0934.t1 | |
| Lsat_s001.g0935.t1 | |
| Lsat_s001.g0936.t1 | |
| Lsat_s001.g0937.t1 | |
| Lsat_s001.g0938.t1 | TGF-BETA FAMILY |
| Lsat_s001.g0939.t1 | |
| Lsat_s001.g0940.t1 | |
| Lsat_s001.g0941.t1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| Lsat_s001.g0942.t1 | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED |
| Lsat_s001.g0943.t1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 |
| Lsat_s001.g0944.t1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| Lsat_s001.g0945.t1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0946.t1 | INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG |
| Lsat_s001.g0947.t1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| Lsat_s001.g0948.t1 | DISCS LARGE |
| Lsat_s001.g0949.t1 | UNCHARACTERIZED |
| Lsat_s001.g0950.t1 | RFX TRANSCRIPTION FACTOR FAMILY |
