About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46258REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46259SERINE/THREONINE-PROTEIN KINASE
Paelopatides46260PROTEIN CBG26694
Paelopatides46261ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides46262PROTEIN CBG26694
Paelopatides46263CYTOKINE RECEPTOR
Paelopatides46264SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides46265CYTOCHROME P450 FAMILY 4
Paelopatides46266-
Paelopatides46267-
Paelopatides46268SI:CH211-108C17.2-RELATED-RELATED
Paelopatides46269N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides46270SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46271-
Paelopatides46272MIP08469P
Paelopatides46274-
Paelopatides46275-
Paelopatides46276RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides46277CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46278SR-RELATED CTD ASSOCIATED FACTOR 6
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