About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46319-
Paelopatides46320-
Paelopatides46321FI04035P
Paelopatides46322FI04035P
Paelopatides46323ZINC FINGER PROTEIN
Paelopatides46324SURFACE ANTIGEN BSPA-LIKE-RELATED
Paelopatides46325V-TYPE PROTON ATPASE SUBUNIT C
Paelopatides46326L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides46327POTASSIUM CHANNEL, SUBFAMILY K
Paelopatides46328-
Paelopatides46329-
Paelopatides46330REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46331ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
Paelopatides46332SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides46333TRANSKETOLASE
Paelopatides46334COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4
Paelopatides46335NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
Paelopatides46336-
Paelopatides46337-
Paelopatides46338SEMINAL PLASMA PROTEIN
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