About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46151COX ASSEMBLY MITOCHONDRIAL PROTEIN
Paelopatides46152REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46153-
Paelopatides46157SNF2/RAD54 FAMILY MEMBER
Paelopatides46158WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
Paelopatides46159-
Paelopatides46160NG5
Paelopatides46161-
Paelopatides46162-
Paelopatides46163GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
Paelopatides46164CADHERIN-23
Paelopatides46165CADHERIN-23
Paelopatides46166PROTEIN CBG26694
Paelopatides46167-
Paelopatides46168POL PROTEIN
Paelopatides46169-
Paelopatides46170ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides46171-
Paelopatides46172PROTEIN BARK BEETLE
Paelopatides46173F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
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