About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46111TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X
Paelopatides46112PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Paelopatides46113ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides46114FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46115FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46116-
Paelopatides46117ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46118ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46119-
Paelopatides46120-
Paelopatides46121-
Paelopatides46122CRUMBS FAMILY MEMBER
Paelopatides46123-
Paelopatides46124-
Paelopatides46125TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
Paelopatides46126MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17
Paelopatides46127ENDONUCLEASE-RELATED
Paelopatides46128POL PROTEIN
Paelopatides46129-
Paelopatides46130PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED
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