About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45984-
Paelopatides45985AD039 HT014 THIOREDOXIN FAMILY TRP26
Paelopatides45987UPF0147 PROTEIN MJ1419
Paelopatides45988RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides45989RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides45990-
Paelopatides45991-
Paelopatides45992REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45993PROTEIN STPG4
Paelopatides45994CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45995-
Paelopatides45996REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45997-
Paelopatides45998N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Paelopatides45999NEPHROCYSTIN
Paelopatides46000PROTEIN CBG26694
Paelopatides46001PROTEIN CBG26694
Paelopatides46002FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46003FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46004ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
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