About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46007STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides46008AGAP005574-PA
Paelopatides46009STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides46010STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides46011-
Paelopatides46013-
Paelopatides46014-
Paelopatides46015-
Paelopatides46016REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46017METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides46018-
Paelopatides46019SI:CH211-196P9.1-RELATED
Paelopatides46020-
Paelopatides46021SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46022TETRASPANIN
Paelopatides46023MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides46024ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4
Paelopatides46025ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4
Paelopatides46026-
Paelopatides46027UBIQUITIN-CONJUGATING ENZYME E2
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