Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s011.g0527.t1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
Lsat_s011.g0528.t1 | UNCHARACTERIZED |
Lsat_s011.g0529.t1 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE |
Lsat_s011.g0530.t1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
Lsat_s011.g0531.t1 | |
Lsat_s011.g0532.t1 | PLAT DOMAIN-CONTAINING PROTEIN |
Lsat_s011.g0533.t1 | |
Lsat_s011.g0534.t1 | |
Lsat_s011.g0535.t1 | |
Lsat_s011.g0536.t1 | |
Lsat_s011.g0537.t1 | |
Lsat_s011.g0538.t1 | ALPHA-L-IDURONIDASE |
Lsat_s011.g0539.t1 | SOLUBLE LIVER ANTIGEN/LIVER PANCREAS ANTIGEN |
Lsat_s011.g0540.t1 | UNCHARACTERIZED |
Lsat_s011.g0541.t1 | VACUOLAR ATP SYNTHASE SUBUNIT AC39 |
Lsat_s011.g0542.t1 | ADENOSYLHOMOCYSTEINASE |
Lsat_s011.g0543.t1 | |
Lsat_s011.g0544.t1 | ADENOSYLHOMOCYSTEINASE |
Lsat_s011.g0545.t1 | FATTY ACID HYDROXYLASE |
Lsat_s011.g0546.t1 | RE40534P-RELATED |
Lsat_s011.g0547.t1 | TUBULIN POLYGLUTAMYLASE |
Lsat_s011.g0548.t1 | UPF0183 PROTEIN |
Lsat_s011.g0549.t1 | CADHERIN-23 |
Lsat_s011.g0550.t1 | CADHERIN-23 |
Lsat_s011.g0551.t1 | PHENYLALANYL-TRNA SYNTHETASE |
Lsat_s011.g0552.t1 | PROTEIN CBG05349 |
Lsat_s011.g0553.t1 | |
Lsat_s012.g0001.t1 | |
Lsat_s012.g0002.t1 | TRANSMEMBRANE PROTEIN |
Lsat_s012.g0003.t1 | |
Lsat_s012.g0004.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s012.g0005.t1 | TRANSMEMBRANE PROTEIN |
Lsat_s012.g0006.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s012.g0007.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s012.g0008.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s012.g0009.t1 | ANKYRIN REPEAT FAMILY PROTEIN |
Lsat_s012.g0010.t1 | TAZ PROTEIN TAFAZZIN |
Lsat_s012.g0011.t1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4 |
Lsat_s012.g0012.t1 | - |
Lsat_s012.g0013.t1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
Lsat_s012.g0014.t1 | CELL DIVISION PROTEIN KINASE |
Lsat_s012.g0015.t1 | GLYCOSYLTRANSFERASE |
Lsat_s012.g0016.t1 | CELL DIVISION PROTEIN KINASE |
Lsat_s012.g0017.t1 | B-CELL TRANSLOCATION GENE |
Lsat_s012.g0018.t1 | |
Lsat_s012.g0019.t1 | SPORE COAT PROTEIN SP85 |
Lsat_s012.g0020.t1 | |
Lsat_s012.g0021.t1 | INOSITOL POLYPHOSPHATE KINASE 1 |
Lsat_s012.g0022.t1 | |
Lsat_s012.g0023.t1 |