Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s011.g0427.t1 | |
Lsat_s011.g0428.t1 | DYNACTIN SUBUNIT 5 |
Lsat_s011.g0429.t1 | |
Lsat_s011.g0430.t1 | |
Lsat_s011.g0431.t1 | |
Lsat_s011.g0432.t1 | |
Lsat_s011.g0433.t1 | CHRONIC MYELOGENOUS LEUKEMIA TUMOR ANTIGEN 66 |
Lsat_s011.g0434.t1 | 39S RIBOSOMAL PROTEIN L52, MITOCHONDRIAL |
Lsat_s011.g0435.t1 | SI:CH211-108C17.2-RELATED-RELATED |
Lsat_s011.g0436.t1 | TYROSINE-PROTEIN KINASE RECEPTOR |
Lsat_s011.g0437.t1 | DNA LIGASE |
Lsat_s011.g0438.t1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
Lsat_s011.g0439.t1 | |
Lsat_s011.g0440.t1 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
Lsat_s011.g0441.t1 | NG5 |
Lsat_s011.g0442.t1 | NG5 |
Lsat_s011.g0443.t1 | DISCS LARGE |
Lsat_s011.g0444.t1 | NG5 |
Lsat_s011.g0445.t1 | |
Lsat_s011.g0446.t1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
Lsat_s011.g0447.t1 | |
Lsat_s011.g0448.t1 | - |
Lsat_s011.g0449.t1 | - |
Lsat_s011.g0450.t1 | HYALURONIDASE |
Lsat_s011.g0451.t1 | |
Lsat_s011.g0452.t1 | |
Lsat_s011.g0453.t1 | COLLAGEN ALPHA |
Lsat_s011.g0454.t1 | COLLAGEN ALPHA |
Lsat_s011.g0455.t1 | SH3-BINDING |
Lsat_s011.g0456.t1 | |
Lsat_s011.g0457.t1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
Lsat_s011.g0458.t1 | 40S RIBOSOMAL PROTEIN S3A |
Lsat_s011.g0459.t1 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 |
Lsat_s011.g0460.t1 | X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1 |
Lsat_s011.g0461.t1 | NF-KAPPA B ACTIVATING PROTEIN |
Lsat_s011.g0462.t1 | - |
Lsat_s011.g0463.t1 | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER |
Lsat_s011.g0464.t1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
Lsat_s011.g0465.t1 | UNCHARACTERIZED |
Lsat_s011.g0466.t1 | CASEIN KINASE II SUBUNIT ALPHA |
Lsat_s011.g0467.t1 | ORF PROTEIN |
Lsat_s011.g0468.t1 | |
Lsat_s011.g0469.t1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Lsat_s011.g0470.t1 | RHOPHILIN |
Lsat_s011.g0471.t1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
Lsat_s011.g0472.t1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
Lsat_s011.g0473.t1 | MYOSIN LIGHT CHAIN 1, 3 |
Lsat_s011.g0474.t1 | OTU DOMAIN CONTAINING PROTEIN |
Lsat_s011.g0475.t1 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 |
Lsat_s011.g0476.t1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |