Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s008.g0297.t1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Lsat_s008.g0298.t1 | |
| Lsat_s008.g0299.t1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Lsat_s008.g0300.t1 | |
| Lsat_s008.g0301.t1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| Lsat_s008.g0302.t1 | PORCUPINE |
| Lsat_s008.g0303.t1 | DYNEIN HEAVY CHAIN |
| Lsat_s008.g0304.t1 | UNCHARACTERIZED |
| Lsat_s008.g0305.t1 | - |
| Lsat_s008.g0306.t1 | - |
| Lsat_s008.g0307.t1 | - |
| Lsat_s008.g0308.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s008.g0309.t1 | |
| Lsat_s008.g0310.t1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
| Lsat_s008.g0311.t1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
| Lsat_s008.g0312.t1 | |
| Lsat_s008.g0313.t1 | N-TERMINAL ACETYLTRANSFERASE |
| Lsat_s008.g0314.t1 | BICAUDAL D FAMILY MEMBER |
| Lsat_s008.g0315.t1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
| Lsat_s008.g0316.t1 | |
| Lsat_s008.g0317.t1 | PROTEIN ATP6V1FNB-LIKE |
| Lsat_s008.g0318.t1 | |
| Lsat_s008.g0319.t1 | |
| Lsat_s008.g0320.t1 | PROTEIN ATP6V1FNB-LIKE |
| Lsat_s008.g0321.t1 | INTERLEUKIN-17 RECEPTOR |
| Lsat_s008.g0322.t1 | F-BOX ONLY PROTEIN 4 |
| Lsat_s008.g0323.t1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| Lsat_s008.g0324.t1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| Lsat_s008.g0325.t1 | CRUMBS FAMILY MEMBER |
| Lsat_s008.g0326.t1 | |
| Lsat_s008.g0327.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s008.g0328.t1 | INTELECTIN |
| Lsat_s008.g0329.t1 | ALMS1-RELATED |
| Lsat_s008.g0330.t1 | COMM DOMAIN CONTAINING PROTEIN 2 |
| Lsat_s008.g0331.t1 | METHYL-CPG-BINDING PROTEIN |
| Lsat_s008.g0332.t1 | |
| Lsat_s008.g0333.t1 | PROTEIN NEDD1 |
| Lsat_s008.g0334.t1 | GLYCOSYLTRANSFERASE |
| Lsat_s008.g0335.t1 | NUCLEAR HORMONE RECEPTOR |
| Lsat_s008.g0336.t1 | GRAM DOMAIN-CONTAINING PROTEIN 4 |
| Lsat_s008.g0337.t1 | |
| Lsat_s008.g0338.t1 | |
| Lsat_s008.g0339.t1 | |
| Lsat_s008.g0340.t1 | PROTEIN SIDEKICK |
| Lsat_s008.g0341.t1 | - |
| Lsat_s008.g0342.t1 | CONTACTIN 5 |
| Lsat_s008.g0343.t1 | PROTEIN ECT2 |
| Lsat_s008.g0344.t1 | PROTEIN SIDEKICK |
| Lsat_s008.g0345.t1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA |
| Lsat_s008.g0346.t1 | UNCHARACTERIZED |
