The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides56800 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56801 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56802 | |
| Paelopatides56803 | |
| Paelopatides56804 | |
| Paelopatides56805 | ZGC:195170 |
| Paelopatides56806 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56807 | |
| Paelopatides56808 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED |
| Paelopatides56809 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56810 | |
| Paelopatides56811 | IP01015P-RELATED |
| Paelopatides56812 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56813 | |
| Paelopatides56815 | SOLUTE CARRIER FAMILY 40 MEMBER |
| Paelopatides56816 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides56817 | |
| Paelopatides56818 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides56819 | |
| Paelopatides56820 | RADICAL SAM PROTEINS |
| Paelopatides56821 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| Paelopatides56822 | |
| Paelopatides56823 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| Paelopatides56824 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Paelopatides56825 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Paelopatides56826 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| Paelopatides56827 | N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D |
| Paelopatides56828 | BEN DOMAIN-CONTAINING PROTEIN 6 |
| Paelopatides56829 | ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1 |
| Paelopatides56830 | SPINDLIN |
| Paelopatides56831 | |
| Paelopatides56832 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Paelopatides56833 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| Paelopatides56834 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Paelopatides56835 | |
| Paelopatides56836 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| Paelopatides56837 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Paelopatides56838 | |
| Paelopatides56839 | UNCHARACTERIZED |
| Paelopatides56840 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
| Paelopatides56841 | |
| Paelopatides56842 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides56843 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Paelopatides56844 | PROTEIN CBG26694 |
| Paelopatides56845 | EXPRESSED PROTEIN |
| Paelopatides56846 | PROTEIN CBG26694 |
| Paelopatides56847 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides56848 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| Paelopatides56849 | TRANSPOSASE, PUTATIVE-RELATED |
| Paelopatides56850 |
