Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_035575-T1 | GABA-B RECEPTOR |
LLU|FUN_035576-T1 | GABA-B RECEPTOR |
LLU|FUN_035577-T1 | GABA-B RECEPTOR |
LLU|FUN_035578-T1 | GABA-B RECEPTOR |
LLU|FUN_035579-T1 | GABA-B RECEPTOR |
LLU|FUN_035580-T1 | GABA-B RECEPTOR |
LLU|FUN_035581-T1 | |
LLU|FUN_035582-T1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
LLU|FUN_035583-T1 | WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_035584-T1 | |
LLU|FUN_035585-T1 | POLYCYSTIN FAMILY MEMBER |
LLU|FUN_035586-T1 | |
LLU|FUN_035587-T1 | |
LLU|FUN_035588-T1 | UNCHARACTERIZED |
LLU|FUN_035589-T1 | KU AUTOANTIGEN DNA HELICASE |
LLU|FUN_035590-T1 | CORNICHON-RELATED |
LLU|FUN_035591-T1 | TRAF3-INTERACTING PROTEIN 1 |
LLU|FUN_035592-T1 | NADH-UBIQUINONE OXIDOREDUCTASE |
LLU|FUN_035593-T1 | CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED |
LLU|FUN_035594-T1 | ZINC FINGER-CONTAINING |
LLU|FUN_035595-T1 | |
LLU|FUN_035596-T1 | |
LLU|FUN_035597-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_035598-T1 | |
LLU|FUN_035599-T1 | |
LLU|FUN_035600-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035601-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035602-T1 | |
LLU|FUN_035603-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035604-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035605-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035606-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035607-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035608-T1 | |
LLU|FUN_035609-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035610-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035611-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_035612-T1 | |
LLU|FUN_035613-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035614-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035615-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035616-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_035617-T1 | |
LLU|FUN_035618-T1 | |
LLU|FUN_035619-T1 | |
LLU|FUN_035620-T1 | |
LLU|FUN_035621-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_035622-T1 | 50S RIBOSOMAL PROTEIN L4 |
LLU|FUN_035623-T1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
LLU|FUN_035624-T1 | UNCHARACTERIZED |