Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_035525-T1 | |
LLU|FUN_035526-T1 | |
LLU|FUN_035527-T1 | IMPORTIN BETA |
LLU|FUN_035528-T1 | WD40 REPEAT PROTEIN 12, 37 |
LLU|FUN_035529-T1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
LLU|FUN_035530-T1 | LEUCINE RICH REPEAT PROTEIN |
LLU|FUN_035531-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_035532-T1 | |
LLU|FUN_035533-T1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
LLU|FUN_035534-T1 | |
LLU|FUN_035535-T1 | SI:CH211-262H13.3-RELATED-RELATED |
LLU|FUN_035536-T1 | |
LLU|FUN_035537-T1 | |
LLU|FUN_035538-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_035539-T1 | |
LLU|FUN_035540-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_035541-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2A |
LLU|FUN_035542-T1 | BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY |
LLU|FUN_035543-T1 | |
LLU|FUN_035544-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
LLU|FUN_035545-T1 | |
LLU|FUN_035546-T1 | |
LLU|FUN_035547-T1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 |
LLU|FUN_035548-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18 |
LLU|FUN_035549-T1 | |
LLU|FUN_035550-T1 | |
LLU|FUN_035551-T1 | |
LLU|FUN_035552-T1 | |
LLU|FUN_035553-T1 | |
LLU|FUN_035554-T1 | |
LLU|FUN_035555-T1 | |
LLU|FUN_035556-T1 | |
LLU|FUN_035557-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_035558-T1 | |
LLU|FUN_035559-T1 | UNCHARACTERIZED |
LLU|FUN_035560-T1 | |
LLU|FUN_035561-T1 | ASPARTYL AMINOPEPTIDASE |
LLU|FUN_035562-T1 | VACUOLAR CALCIUM ION TRANSPORTER |
LLU|FUN_035563-T1 | SERINE-THREONINE PROTEIN KINASE |
LLU|FUN_035564-T1 | |
LLU|FUN_035565-T1 | UNCHARACTERIZED |
LLU|FUN_035566-T1 | |
LLU|FUN_035567-T1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
LLU|FUN_035568-T1 | GABA-B RECEPTOR |
LLU|FUN_035569-T1 | GABA-B RECEPTOR |
LLU|FUN_035570-T1 | |
LLU|FUN_035571-T1 | GABA-B RECEPTOR |
LLU|FUN_035572-T1 | GABA-B RECEPTOR |
LLU|FUN_035573-T1 | GABA-B RECEPTOR |
LLU|FUN_035574-T1 | GABA-B RECEPTOR |