
Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s004.g0136.t1 | - |
| Lsat_s004.g0137.t1 | GLYCOSYL HYDROLASE DIGH |
| Lsat_s004.g0138.t1 | TUBULIN |
| Lsat_s004.g0139.t1 | |
| Lsat_s004.g0140.t1 | THROMBOSPONDIN |
| Lsat_s004.g0141.t1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Lsat_s004.g0142.t1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| Lsat_s004.g0143.t1 | TRNA PSEUDOURIDINE SYNTHASE D |
| Lsat_s004.g0144.t1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s004.g0145.t1 | |
| Lsat_s004.g0146.t1 | |
| Lsat_s004.g0147.t1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| Lsat_s004.g0148.t1 | RAB GDP-DISSOCIATION INHIBITOR |
| Lsat_s004.g0149.t1 | NAD DEPENDENT EPIMERASE/DEHYDRATASE |
| Lsat_s004.g0150.t1 | |
| Lsat_s004.g0151.t1 | NAD DEPENDENT EPIMERASE/DEHYDRATASE |
| Lsat_s004.g0152.t1 | |
| Lsat_s004.g0153.t1 | |
| Lsat_s004.g0154.t1 | |
| Lsat_s004.g0155.t1 | |
| Lsat_s004.g0156.t1 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |
| Lsat_s004.g0157.t1 | |
| Lsat_s004.g0158.t1 | |
| Lsat_s004.g0159.t1 | SPOT2-RELATED |
| Lsat_s004.g0160.t1 | HISTONE DEACETYLASE HDAC1-RELATED |
| Lsat_s004.g0161.t1 | |
| Lsat_s004.g0162.t1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Lsat_s004.g0163.t1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| Lsat_s004.g0164.t1 | CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1 |
| Lsat_s004.g0165.t1 | TRANSMEMBRANE PROTEIN 243 |
| Lsat_s004.g0166.t1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| Lsat_s004.g0167.t1 | DYNAMIN |
| Lsat_s004.g0168.t1 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Lsat_s004.g0169.t1 | SAM (S-ADENOSYL METHIONINE) TRANSPORTER |
| Lsat_s004.g0170.t1 | |
| Lsat_s004.g0171.t1 | GLYCOSYLTRANSFERASE |
| Lsat_s004.g0172.t1 | GRIP-1 ASSOCIATED PROTEIN 1 |
| Lsat_s004.g0173.t1 | |
| Lsat_s004.g0174.t1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Lsat_s004.g0175.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 51 |
| Lsat_s004.g0176.t1 | OTU DOMAIN CONTAINING PROTEIN |
| Lsat_s004.g0177.t1 | SERINE/THREONINE-PROTEIN KINASE PIM |
| Lsat_s004.g0178.t1 | |
| Lsat_s004.g0179.t1 | |
| Lsat_s004.g0180.t1 | |
| Lsat_s004.g0181.t1 | |
| Lsat_s004.g0182.t1 | FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN |
| Lsat_s004.g0183.t1 | |
| Lsat_s004.g0184.t1 | EXPRESSED PROTEIN |
| Lsat_s004.g0185.t1 |