About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s019.g0322.t1-
Lsat_s019.g0323.t1FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
Lsat_s019.g0324.t1DUMPY: SHORTER THAN WILD-TYPE
Lsat_s019.g0325.t1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Lsat_s019.g0326.t1THUMP DOMAIN-CONTAINING
Lsat_s019.g0327.t1PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN
Lsat_s019.g0328.t1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Lsat_s019.g0329.t1UNCHARACTERIZED
Lsat_s019.g0330.t1GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2
Lsat_s019.g0331.t1STAR-RELATED LIPID TRANSFER PROTEIN 9
Lsat_s019.g0332.t126S PROTEASOME REGULATORY SUBUNIT
Lsat_s019.g0333.t1MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1
Lsat_s019.g0334.t1-
Lsat_s019.g0335.t1-
Lsat_s019.g0336.t1CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Lsat_s019.g0337.t1UNCHARACTERIZED
Lsat_s019.g0338.t1GH04784P
Lsat_s019.g0339.t1WD REPEAT-CONTAINING PROTEIN 27
Lsat_s019.g0340.t1KATNB1-LIKE PROTEIN 1
Lsat_s019.g0341.t1VISUAL SYSTEM HOMEOBOX 2
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