About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_024924-T1
LLU|FUN_024925-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
LLU|FUN_024926-T1
LLU|FUN_024927-T1
LLU|FUN_024928-T1
LLU|FUN_024929-T1
LLU|FUN_024930-T1
LLU|FUN_024931-T1
LLU|FUN_024932-T1
LLU|FUN_024933-T1
LLU|FUN_024934-T1COLLAGEN ALPHA
LLU|FUN_024935-T1EXPRESSED PROTEIN
LLU|FUN_024936-T1RGD1565685 PROTEIN
LLU|FUN_024937-T1
LLU|FUN_024938-T1
LLU|FUN_024939-T1
LLU|FUN_024940-T1
LLU|FUN_024941-T1AMYLOID PROTEIN-BINDING PROTEIN 2
LLU|FUN_024942-T1OXYSTEROL-BINDING PROTEIN-RELATED
LLU|FUN_024943-T1AGAP001331-PA-RELATED
LLU|FUN_024944-T1
LLU|FUN_024945-T1GLYCOSYLTRANSFERASE
LLU|FUN_024946-T1
LLU|FUN_024947-T1
LLU|FUN_024948-T1
LLU|FUN_024949-T1CHYMOTRYPSIN-RELATED
LLU|FUN_024950-T1MERLIN/MOESIN/EZRIN/RADIXIN
LLU|FUN_024951-T1METALLOPHOSPHOESTERASE
LLU|FUN_024952-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_024953-T1HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG
LLU|FUN_024954-T1
LLU|FUN_024955-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
LLU|FUN_024956-T1
LLU|FUN_024957-T1PDZ AND LIM DOMAIN PROTEIN ZASP
LLU|FUN_024958-T1
LLU|FUN_024959-T1PALMITOYLTRANSFERASE
LLU|FUN_024960-T1
LLU|FUN_024961-T1CALPAIN
LLU|FUN_024962-T1DENSITY-REGULATED PROTEIN HOMOLOG
LLU|FUN_024963-T1TECTONIC FAMILY MEMBER
LLU|FUN_024964-T1TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
LLU|FUN_024965-T1TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
LLU|FUN_024966-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
LLU|FUN_024967-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
LLU|FUN_024968-T1UNCHARACTERIZED
LLU|FUN_024969-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
LLU|FUN_024970-T1MACROGLOBULIN / COMPLEMENT
LLU|FUN_024971-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_024972-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_024973-T1MACROGLOBULIN / COMPLEMENT
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