About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_017145-T1
LLU|FUN_017146-T1
LLU|FUN_017147-T1MYOSIN VII, XV
LLU|FUN_017148-T1
LLU|FUN_017149-T1AGAP003327-PA
LLU|FUN_017150-T1PR DOMAIN ZINC FINGER PROTEIN
LLU|FUN_017151-T1NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1
LLU|FUN_017152-T1SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
LLU|FUN_017153-T1TRANSCRIPTIONAL REPRESSOR PROTEIN YY
LLU|FUN_017154-T1NUCLEAR FACTOR NF-KAPPA-B PROTEIN
LLU|FUN_017155-T1TESTIS-SPECIFIC EXPRESSED PROTEIN 55
LLU|FUN_017156-T1WD-40 REPEAT PROTEIN
LLU|FUN_017157-T1UNCHARACTERIZED
LLU|FUN_017158-T1SACSIN
LLU|FUN_017159-T1ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
LLU|FUN_017160-T1
LLU|FUN_017161-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 181
LLU|FUN_017162-T1
LLU|FUN_017163-T1RGD1565685 PROTEIN
LLU|FUN_017164-T1RAN GTPASE-ACTIVATING PROTEIN 1
LLU|FUN_017165-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_017166-T1CRUMBS FAMILY MEMBER
LLU|FUN_017167-T1
LLU|FUN_017168-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_017169-T1
LLU|FUN_017170-T1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_017171-T1CYTOSOLIC CARBOXYPEPTIDASE
LLU|FUN_017172-T1
LLU|FUN_017173-T1
LLU|FUN_017174-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
LLU|FUN_017175-T1DIACYLGLYCEROL KINASE
LLU|FUN_017176-T1
LLU|FUN_017177-T1CRUMBS FAMILY MEMBER
LLU|FUN_017178-T1CRUMBS FAMILY MEMBER
LLU|FUN_017179-T1
LLU|FUN_017180-T1
LLU|FUN_017181-T1
LLU|FUN_017182-T1HOMEOBOX PROTEIN MSX
LLU|FUN_017183-T1
LLU|FUN_017184-T1
LLU|FUN_017185-T1
LLU|FUN_017187-T1
LLU|FUN_017188-T1AGAP008005-PA
LLU|FUN_017189-T1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
LLU|FUN_017190-T1GH01354P
LLU|FUN_017191-T1
LLU|FUN_017192-T1HISTONE-LYSINE N-METHYLTRANSFERASE ASH1
LLU|FUN_017193-T1
LLU|FUN_017194-T1
LLU|FUN_017195-T1
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