About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s031.g0190.t1WD REPEAT CONTAINING PROTEIN 3 WDR3
Lsat_s031.g0191.t15'-NUCLEOTIDASE-RELATED
Lsat_s031.g0192.t1
Lsat_s031.g0193.t15'-NUCLEOTIDASE-RELATED
Lsat_s031.g0194.t1
Lsat_s031.g0195.t1
Lsat_s031.g0196.t1SH3 DOMAIN-CONTAINING
Lsat_s031.g0197.t1RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F
Lsat_s031.g0198.t1
Lsat_s031.g0199.t1CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1
Lsat_s031.g0200.t1
Lsat_s031.g0201.t1DOPEY-RELATED
Lsat_s031.g0202.t1BONUS, ISOFORM C-RELATED
Lsat_s031.g0203.t1
Lsat_s031.g0204.t1DOPEY-RELATED
Lsat_s031.g0205.t1ALPHA-PROTEIN KINASE VWKA
Lsat_s031.g0206.t1METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
Lsat_s031.g0207.t1PLAT DOMAIN-CONTAINING PROTEIN
Lsat_s031.g0208.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0209.t1
Lsat_s031.g0210.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0211.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0212.t1
Lsat_s031.g0213.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0214.t1
Lsat_s031.g0215.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0216.t1DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Lsat_s031.g0217.t1INHIBITOR OF APOPTOSIS
Lsat_s031.g0218.t12-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Lsat_s031.g0219.t12-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Lsat_s031.g0220.t1PYRIDOXINE-5-PHOSPHATE OXIDASE
Lsat_s031.g0221.t1ANOCTAMIN
Lsat_s031.g0222.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Lsat_s031.g0223.t1
Lsat_s031.g0224.t1
Lsat_s031.g0225.t1MYB-LIKE PROTEIN V
Lsat_s031.g0226.t1
Lsat_s031.g0227.t1CALCYPHOSIN
Lsat_s031.g0228.t1SMALL NUCLEAR RIBONUCLEOPROTEIN E
Lsat_s031.g0229.t1
Lsat_s031.g0230.t1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Lsat_s031.g0231.t1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Lsat_s031.g0232.t1UNCHARACTERIZED
Lsat_s031.g0233.t1ELASTIN
Lsat_s031.g0234.t1
Lsat_s031.g0235.t1
Lsat_s031.g0236.t1PR DOMAIN ZINC FINGER PROTEIN
Lsat_s031.g0237.t1
Lsat_s031.g0238.t1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Lsat_s031.g0239.t1NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
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