The Atlantic deep-sea scallop Placopecten magellanicus is a species in the family Pectinidae. And they are a commercially important pectinid bivalve mollusk native to the northwest Atlantic Ocean. In addition, they are found on the continental shelf of the northwest Atlantic from the north shore of the Gulf of St. Lawrence south to Cape Hatteras, North Carolina.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Placopecten magellanicus | Mollusca | deep-sea scallop | Hydrothermal vent | 0-384 | Dalian in the Liaoning Province of China (38.43 N 120.91 E) | 6577 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 1.83Gb | Chromosome | 2023 | - | Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute | PRJNA923123 | 94.10% | 28,111 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Chromosome-level genome assembly of sea scallop Placopecten magellanicus provides insights into the genetic characteristics and adaptive evolution of large scallops | Genomics | 37977331 |
| Gene ID | Description |
|---|---|
| PMEG.utg000422l.56 | KNIRPS-RELATED PROTEIN-RELATED |
| PMEG.utg000422l.57 | |
| PMEG.utg000422l.58 | HOMEOBOX PROTEIN ARISTALESS |
| PMEG.utg000422l.59 | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN |
| PMEG.utg000422l.6 | SPECTRIN REPEAT CONTAINING NUCLEAR ENVELOPE PROTEIN 2 |
| PMEG.utg000422l.60 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
| PMEG.utg000422l.61 | RAS-RELATED PROTEIN RAB |
| PMEG.utg000422l.62 | AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN |
| PMEG.utg000422l.63 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| PMEG.utg000422l.64 | TETRATRICOPEPTIDE-LIKE HELICAL |
| PMEG.utg000422l.65 | MONOCARBOXYLATE TRANSPORTER |
| PMEG.utg000422l.66 | YNEIN REGULATORY COMPLEX SUBUNIT 5 |
| PMEG.utg000422l.67 | RNA POLYMERASE II-ASSOCIATED PROTEIN 1 |
| PMEG.utg000422l.68 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| PMEG.utg000422l.69 | LITHOSTATHINE |
| PMEG.utg000422l.7 | CENTROSOMAL PROTEIN 2 |
| PMEG.utg000422l.70 | |
| PMEG.utg000422l.71 | G-PROTEIN COUPLED RECEPTOR |
| PMEG.utg000422l.72 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| PMEG.utg000422l.73 | CYTOCHROME P450 FAMILY 4 |
| PMEG.utg000422l.74 | DIMETHYLANILINE MONOOXYGENASE |
| PMEG.utg000422l.75 | CYTOCHROME P450 |
| PMEG.utg000422l.76 | SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1 |
| PMEG.utg000422l.77 | |
| PMEG.utg000422l.78 | TRANSMEMBRANE PROTEIN 260 |
| PMEG.utg000422l.79 | |
| PMEG.utg000422l.8 | INTERFERON-INDUCED PROTEIN 44 |
| PMEG.utg000422l.80 | |
| PMEG.utg000422l.81 | PROTEIN STPG4 |
| PMEG.utg000422l.82 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG |
| PMEG.utg000422l.83 | UNCHARACTERIZED |
| PMEG.utg000422l.84 | |
| PMEG.utg000422l.85 | GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| PMEG.utg000422l.86 | UNCHARACTERIZED |
| PMEG.utg000422l.87 | SERYL-TRNA SYNTHETASE |
| PMEG.utg000422l.88 | HL07962P-RELATED |
| PMEG.utg000422l.89 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| PMEG.utg000422l.9 | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN |
| PMEG.utg000422l.90 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| PMEG.utg000422l.91 | CCAAT-BINDING FACTOR-RELATED |
| PMEG.utg000422l.92 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| PMEG.utg000422l.93 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| PMEG.utg000422l.94 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| PMEG.utg000422l.95 | UNCHARACTERIZED |
| PMEG.utg000422l.96 | UNCHARACTERIZED |
| PMEG.utg000422l.97 | HEMOGLOBINASE FAMILY MEMBER |
| PMEG.utg000422l.98 | MED-6-RELATED |
| PMEG.utg000422l.99 | RHO FAMILY GTPASE |
| PMEG.utg000423l.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| PMEG.utg000423l.10 |
