About Amblyraja radiata

The thorny skate Amblyraja radiata is a species of fish in the family Rajidae. This bottom-living skate lives in the North and south-eastern Atlantic Ocean in depths ranging from 20 to 1,000 m and water temperatures from −1 to 14 °C. It has a hard, roughly triangular snout and a tail, which is shorter than its body. It eats crustaceans, small fishes, and worms. It produces egg capsules, which hatch outside the body.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Chondrichthyes (Parvphylum); Elasmobranchii (Class); Neoselachii (Subclass); Batoidea (Infraclass); Rajiformes (Order); Rajidae (Family); Amblyraja (Genus); Amblyraja radiata (Species)

Original Name

Raja radiata Donovan, 1808

Original description

(Donovan et al., 1808)

Partial Description

Diet Crustaceans, bony fishes and polychaete worms

Distribution/locality

Greenland and Hudson Bay to South Carolina


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Amblyraja radiataChordatathorny skateHydrothermal vent～1500Tocopilla, northern Chile386614

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
sAmbRad1.1.pri2.6GbChromosome2020JAAGWR01Vertebrate Genomes ProjectPRJNA59136996.70 62,100/1,50044.5-18,474

Gene Information

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Gene IDDescription
XP_032874821.1COILED-COIL DOMAIN-CONTAINING PROTEIN 102A
XP_032874822.1COILED-COIL DOMAIN-CONTAINING PROTEIN 102A
XP_032874823.1COILED-COIL DOMAIN-CONTAINING PROTEIN 102A
XP_032874824.1PROTEIN DISULFIDE-ISOMERASE TMX3
XP_032874825.1PROTEIN DISULFIDE-ISOMERASE TMX3
XP_032874826.1HOMEOBOX PROTEIN HMX
XP_032874827.1CYTOCHROME C OXIDASE SUBUNIT 6C
XP_032874828.1F-BOX ONLY PROTEIN 5 AND 43
XP_032874829.1DNA-DIRECTED RNA POLYMERASES I, II, AND III
XP_032874830.1RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG
XP_032874831.1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
XP_032874832.1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
XP_032874833.1SORTING NEXIN 17 AND 27
XP_032874834.1HOMEOBOX PROTEIN HMX
XP_032874835.1SORTING NEXIN 17 AND 27
XP_032874836.1SORTING NEXIN 17 AND 27
XP_032874837.1SORTING NEXIN 17 AND 27
XP_032874838.1RNA BINDING PROTEIN
XP_032874839.114-3-3 PROTEIN
XP_032874840.114-3-3 PROTEIN
XP_032874841.1GEO09665P1-RELATED
XP_032874842.1TRANSCRIPTION FACTOR CP2
XP_032874843.1TRANSCRIPTION FACTOR CP2
XP_032874844.1CALCIUM BINDING PROTEINS
XP_032874845.1CALCIUM BINDING PROTEINS
XP_032874846.1HOMEOBOX PROTEIN HMX
XP_032874847.1CALCIUM BINDING PROTEINS
XP_032874848.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874849.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874850.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874851.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874852.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874853.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874854.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874855.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874856.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874857.1DEAD/H RNA HELICASE, PUTATIVE-RELATED
XP_032874858.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874859.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874860.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874861.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874862.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874863.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874864.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874865.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874866.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874867.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
XP_032874868.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
XP_032874869.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
XP_032874870.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
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