About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s009.g0550.t1TBC1 DOMAIN FAMILY MEMBER 7
Lsat_s009.g0551.t1ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
Lsat_s009.g0552.t1ANKYRIN REPEAT CONTAINING
Lsat_s009.g0553.t1GRB10 INTERACTING GYF PROTEIN
Lsat_s009.g0554.t1
Lsat_s009.g0555.t1
Lsat_s009.g0556.t1
Lsat_s009.g0557.t1
Lsat_s009.g0558.t1
Lsat_s009.g0559.t1
Lsat_s009.g0560.t1
Lsat_s009.g0561.t1
Lsat_s009.g0562.t1
Lsat_s009.g0563.t1LIN-9
Lsat_s009.g0564.t1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Lsat_s009.g0565.t1-
Lsat_s009.g0566.t1PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC
Lsat_s009.g0567.t1
Lsat_s009.g0568.t1
Lsat_s010.g0001.t1RNA-BINDING MOTIF PROTEIN, X-LINKED 2
Lsat_s010.g0002.t1SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Lsat_s010.g0003.t1
Lsat_s010.g0004.t1PHOSPHOGLYCERATE KINASE
Lsat_s010.g0005.t1ZINC FINGER PROTEIN
Lsat_s010.g0006.t1ZINC FINGER PROTEIN
Lsat_s010.g0007.t1
Lsat_s010.g0008.t1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
Lsat_s010.g0009.t1KELCH PROTEIN
Lsat_s010.g0010.t1
Lsat_s010.g0011.t1TETRATRICOPEPTIDE REPEAT PROTEIN 6
Lsat_s010.g0012.t139S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
Lsat_s010.g0013.t1
Lsat_s010.g0014.t1
Lsat_s010.g0015.t1MUCIN-22
Lsat_s010.g0016.t1
Lsat_s010.g0017.t1
Lsat_s010.g0018.t1TOLL-LIKE RECEPTOR
Lsat_s010.g0019.t1YIPPEE DOMAIN-CONTAINING PROTEIN
Lsat_s010.g0020.t1KELCH PROTEIN
Lsat_s010.g0021.t1LD33804P
Lsat_s010.g0022.t1
Lsat_s010.g0023.t1
Lsat_s010.g0024.t1
Lsat_s010.g0025.t1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Lsat_s010.g0026.t1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Lsat_s010.g0027.t1
Lsat_s010.g0028.t1-
Lsat_s010.g0029.t1
Lsat_s010.g0030.t1
Lsat_s010.g0031.t1
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