Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s009.g0350.t1 | - |
| Lsat_s009.g0351.t1 | |
| Lsat_s009.g0352.t1 | HOMEOBOX PROTEIN ARISTALESS |
| Lsat_s009.g0353.t1 | |
| Lsat_s009.g0354.t1 | |
| Lsat_s009.g0355.t1 | |
| Lsat_s009.g0356.t1 | |
| Lsat_s009.g0357.t1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Lsat_s009.g0358.t1 | ETS |
| Lsat_s009.g0359.t1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Lsat_s009.g0360.t1 | |
| Lsat_s009.g0361.t1 | |
| Lsat_s009.g0362.t1 | |
| Lsat_s009.g0363.t1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Lsat_s009.g0364.t1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Lsat_s009.g0365.t1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Lsat_s009.g0366.t1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| Lsat_s009.g0367.t1 | |
| Lsat_s009.g0368.t1 | |
| Lsat_s009.g0369.t1 | |
| Lsat_s009.g0370.t1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C |
| Lsat_s009.g0371.t1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| Lsat_s009.g0372.t1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN |
| Lsat_s009.g0373.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Lsat_s009.g0374.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Lsat_s009.g0375.t1 | HYR DOMAIN-CONTAINING PROTEIN |
| Lsat_s009.g0376.t1 | |
| Lsat_s009.g0377.t1 | FORMIN-BINDING PROTEIN 4 |
| Lsat_s009.g0378.t1 | SYNEMBRYN |
| Lsat_s009.g0379.t1 | UNCHARACTERIZED |
| Lsat_s009.g0380.t1 | |
| Lsat_s009.g0381.t1 | |
| Lsat_s009.g0382.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 14 |
| Lsat_s009.g0383.t1 | CHOLINE/ETHANOALAMINE KINASE |
| Lsat_s009.g0384.t1 | CHOLINE/ETHANOALAMINE KINASE |
| Lsat_s009.g0385.t1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s009.g0386.t1 | CHOLINE/ETHANOALAMINE KINASE |
| Lsat_s009.g0387.t1 | PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL |
| Lsat_s009.g0388.t1 | CHOLINE/ETHANOALAMINE KINASE |
| Lsat_s009.g0389.t1 | IODOTHYRONINE DEIODINASE |
| Lsat_s009.g0390.t1 | IODOTHYRONINE DEIODINASE |
| Lsat_s009.g0391.t1 | |
| Lsat_s009.g0392.t1 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
| Lsat_s009.g0393.t1 | |
| Lsat_s009.g0394.t1 | |
| Lsat_s009.g0395.t1 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
| Lsat_s009.g0396.t1 | BLR2807 PROTEIN |
| Lsat_s009.g0397.t1 | |
| Lsat_s009.g0398.t1 | BLR2807 PROTEIN |
| Lsat_s009.g0399.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
