Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s009.g0400.t1 | UPF0705 PROTEIN C11ORF49 |
| Lsat_s009.g0401.t1 | |
| Lsat_s009.g0402.t1 | CRUMBS FAMILY MEMBER |
| Lsat_s009.g0403.t1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Lsat_s009.g0404.t1 | PROTEIN BARK BEETLE |
| Lsat_s009.g0405.t1 | |
| Lsat_s009.g0406.t1 | |
| Lsat_s009.g0407.t1 | CENTROMERE PROTEIN E |
| Lsat_s009.g0408.t1 | |
| Lsat_s009.g0409.t1 | TEKTIN |
| Lsat_s009.g0410.t1 | |
| Lsat_s009.g0411.t1 | SYNTAXIN |
| Lsat_s009.g0412.t1 | |
| Lsat_s009.g0413.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s009.g0414.t1 | RHO-GTPASE-ACTIVATING PROTEIN LRG1 |
| Lsat_s009.g0415.t1 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE |
| Lsat_s009.g0416.t1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 |
| Lsat_s009.g0417.t1 | - |
| Lsat_s009.g0418.t1 | VILLIN |
| Lsat_s009.g0419.t1 | VILLIN |
| Lsat_s009.g0420.t1 | |
| Lsat_s009.g0421.t1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Lsat_s009.g0422.t1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Lsat_s009.g0423.t1 | CARBOHYDRATE SULFOTRANSFERASE |
| Lsat_s009.g0424.t1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s009.g0425.t1 | SER/THR PROTEIN KINASE ULK4 |
| Lsat_s009.g0426.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s009.g0427.t1 | |
| Lsat_s009.g0428.t1 | VILLIN |
| Lsat_s009.g0429.t1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| Lsat_s009.g0430.t1 | |
| Lsat_s009.g0431.t1 | |
| Lsat_s009.g0432.t1 | |
| Lsat_s009.g0433.t1 | - |
| Lsat_s009.g0434.t1 | TUBULIN POLYGLUTAMYLASE |
| Lsat_s009.g0435.t1 | RIKEN CDNA 9930021J03 GENE |
| Lsat_s009.g0436.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s009.g0437.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s009.g0438.t1 | |
| Lsat_s009.g0439.t1 | - |
| Lsat_s009.g0440.t1 | |
| Lsat_s009.g0441.t1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Lsat_s009.g0442.t1 | COLLAGEN ALPHA |
| Lsat_s009.g0443.t1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Lsat_s009.g0444.t1 | SERINE-THREONINE PROTEIN KINASE |
| Lsat_s009.g0445.t1 | |
| Lsat_s009.g0446.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s009.g0447.t1 | |
| Lsat_s009.g0448.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s009.g0449.t1 |
