About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_22028-0.1
Bpl_scaf_22028-0.10
Bpl_scaf_22028-0.11OPSIN
Bpl_scaf_22028-0.2
Bpl_scaf_22028-0.9
Bpl_scaf_22037-0.15
Bpl_scaf_22037-0.18MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_22037-0.21
Bpl_scaf_22037-0.22
Bpl_scaf_22047-0.10RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Bpl_scaf_22047-0.11INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_22047-0.12DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
Bpl_scaf_22047-0.2
Bpl_scaf_2205-0.2PROTEIN FAM167A
Bpl_scaf_2205-0.3TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Bpl_scaf_22054-0.19
Bpl_scaf_22054-0.40
Bpl_scaf_22054-0.43
Bpl_scaf_22054-0.44ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Bpl_scaf_22054-0.45
Bpl_scaf_22063-0.28SI:DKEY-31G6.6
Bpl_scaf_22063-0.33
Bpl_scaf_22063-0.34RNA BINDING PROTEIN
Bpl_scaf_22070-0.0
Bpl_scaf_22070-0.2
Bpl_scaf_22078-0.0
Bpl_scaf_22078-0.13OVOCHYMASE-RELATED
Bpl_scaf_22078-0.14
Bpl_scaf_22078-0.17DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Bpl_scaf_22078-0.18COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Bpl_scaf_22078-0.2
Bpl_scaf_22078-0.6
Bpl_scaf_22088-0.3NEUROPEPTIDE Y RECEPTOR
Bpl_scaf_22089-0.11TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
Bpl_scaf_22089-0.15
Bpl_scaf_22089-0.16FRIZZLED
Bpl_scaf_22089-0.17SYNDECAN
Bpl_scaf_22089-0.24MKRN2 OPPOSITE STRAND PROTEIN
Bpl_scaf_22089-0.27METHYLTRANSFERASE N6AMT1
Bpl_scaf_22089-0.28PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_22098-0.16
Bpl_scaf_22098-0.17CHLORIDE INTRACELLULAR CHANNEL, ISOFORM A
Bpl_scaf_22098-0.19PROFILIN
Bpl_scaf_22098-0.20UNCHARACTERIZED
Bpl_scaf_22098-0.8FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A
Bpl_scaf_22102-0.11
Bpl_scaf_22102-0.18
Bpl_scaf_22102-0.9KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Bpl_scaf_22102-1.0
Bpl_scaf_22102-1.1
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