Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_22360-0.6 | |
| Bpl_scaf_22360-0.7 | |
| Bpl_scaf_22360-1.29 | PSEUDOURIDYLATE SYNTHASE |
| Bpl_scaf_22360-1.3 | |
| Bpl_scaf_22360-1.4 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_22360-1.9 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_22361-0.5 | PROTEIN SIDEKICK |
| Bpl_scaf_22361-0.8 | |
| Bpl_scaf_22361-0.9 | COATOMER |
| Bpl_scaf_22362-0.0 | |
| Bpl_scaf_22362-0.16 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_22362-0.5 | CDNA SEQUENCE BC021608 |
| Bpl_scaf_22362-0.8 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_22362-1.4 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_22362-2.8 | UBIQUITINATION FACTOR E4 |
| Bpl_scaf_22362-2.9 | UBIQUITINATION FACTOR E4 |
| Bpl_scaf_22362-3.14 | |
| Bpl_scaf_22362-3.3 | |
| Bpl_scaf_22362-5.5 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| Bpl_scaf_22362-6.16 | |
| Bpl_scaf_22362-6.9 | CENTROSOMAL PROTEIN 2 |
| Bpl_scaf_22362-7.6 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 |
| Bpl_scaf_22362-7.7 | |
| Bpl_scaf_22362-7.8 | PEROXISOME BIOGENESIS FACTOR 2 |
| Bpl_scaf_22362-8.10 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_22362-8.17 | |
| Bpl_scaf_22362-9.10 | |
| Bpl_scaf_22362-9.3 | SEGMENT POLARITY PROTEIN DISHEVELLED |
| Bpl_scaf_22362-9.4 | SEGMENT POLARITY PROTEIN DISHEVELLED |
| Bpl_scaf_22363-2.2 | |
| Bpl_scaf_22363-2.3 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
| Bpl_scaf_22363-2.4 | |
| Bpl_scaf_22363-3.3 | UNCHARACTERIZED |
| Bpl_scaf_22363-4.2 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_22363-4.3 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_22372-0.0 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Bpl_scaf_22373-0.8 | |
| Bpl_scaf_22373-0.9 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_22373-1.13 | |
| Bpl_scaf_22373-1.17 | |
| Bpl_scaf_22373-1.18 | |
| Bpl_scaf_22373-1.19 | |
| Bpl_scaf_22373-2.10 | |
| Bpl_scaf_22373-2.8 | ALKALI-SENSITIVE LINKAGE PROTEIN 1 |
| Bpl_scaf_22373-2.9 | |
| Bpl_scaf_22373-3.10 | |
| Bpl_scaf_22373-3.22 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Bpl_scaf_22373-3.23 | |
| Bpl_scaf_22373-3.7 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_22373-3.8 |
