About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_21889-0.5ALKALI-SENSITIVE LINKAGE PROTEIN 1
Bpl_scaf_21889-0.9SUCCINATE DEHYDROGENASE
Bpl_scaf_21899-0.21FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_21899-0.25
Bpl_scaf_21899-1.6
Bpl_scaf_21899-1.9PEPTIDOGLYCAN RECOGNITION PROTEIN
Bpl_scaf_21899-2.0
Bpl_scaf_21899-2.1
Bpl_scaf_21899-2.14GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1
Bpl_scaf_21899-2.9FILAGGRIN-RELATED
Bpl_scaf_21899-3.1
Bpl_scaf_21899-3.3SMAD
Bpl_scaf_21899-4.14SIGNAL RECOGNITION PARTICLE 72
Bpl_scaf_21899-4.15DUAL SPECIFICITY PROTEIN PHOSPHATASE
Bpl_scaf_21899-5.5TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_21905-0.20ATP-BINDING CASSETTE SUB-FAMILY C
Bpl_scaf_2194-0.8CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_21948-0.2
Bpl_scaf_21953-0.3
Bpl_scaf_21953-0.6SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
Bpl_scaf_21959-0.2D-AMINOACYL-TRNA DEACYLASE
Bpl_scaf_21959-0.58UNCHARACTERIZED
Bpl_scaf_21960-0.1
Bpl_scaf_21960-0.5
Bpl_scaf_21960-0.6SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Bpl_scaf_21960-1.10
Bpl_scaf_21960-1.11
Bpl_scaf_21960-1.12PROTEIN STAR
Bpl_scaf_21960-2.12ZINC FINGER PROTEIN
Bpl_scaf_21960-2.5PROTEIN PHOSPHATASE
Bpl_scaf_21960-3.11
Bpl_scaf_21960-3.14
Bpl_scaf_21960-3.17MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
Bpl_scaf_21960-4.3CEREBELLIN-RELATED
Bpl_scaf_21960-4.6
Bpl_scaf_21960-6.20CEREBELLIN-RELATED
Bpl_scaf_21960-6.21CEREBELLIN-RELATED
Bpl_scaf_21960-6.9FIBRILLIN-RELATED
Bpl_scaf_21966-0.14DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Bpl_scaf_21966-0.18BTB/POZ DOMAIN-CONTAINING
Bpl_scaf_21979-0.10EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1
Bpl_scaf_21979-0.16
Bpl_scaf_21979-0.24LSM1
Bpl_scaf_21979-0.25SERYL-TRNA SYNTHETASE
Bpl_scaf_21979-0.26SERYL-TRNA SYNTHETASE
Bpl_scaf_21979-0.4
Bpl_scaf_21979-0.9
Bpl_scaf_21994-0.1
Bpl_scaf_22-0.0CEREBELLIN-RELATED
Bpl_scaf_2200-0.3
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