About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2188830.1RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN
KAK2188831.1
KAK2188832.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188833.1
KAK2188834.1COLLAGEN ALPHA
KAK2188835.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188836.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188837.1COLLAGEN ALPHA
KAK2188838.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188839.1
KAK2188840.1COLLAGEN ALPHA
KAK2188841.1
KAK2188842.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188843.1COLLAGEN ALPHA
KAK2188844.1
KAK2188845.1
KAK2188846.1
KAK2188847.1COLLAGEN ALPHA
KAK2188848.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188849.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188850.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2188851.1OVOCHYMASE-RELATED
KAK2188852.1
KAK2188853.1
KAK2188854.1
KAK2188855.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
KAK2188856.1
KAK2188857.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
KAK2188782.1
KAK2188783.1
KAK2188784.1
KAK2188785.1PHD/F-BOX CONTAINING PROTEIN
KAK2188786.1UNCHARACTERIZED
KAK2188787.1GLYCERATE KINASE
KAK2188788.1
KAK2188789.1CYTOKINE RECEPTOR
KAK2188790.1PROTEIN BRICK1
KAK2188791.1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
KAK2188792.1
KAK2188793.1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
KAK2188794.1
KAK2188795.1
KAK2188796.1
KAK2188797.1
KAK2188798.1
KAK2188799.1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
KAK2188800.1PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1
KAK2188801.1
KAK2188802.1
KAK2188803.1
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