Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2188804.1 | - |
| KAK2188805.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2188806.1 | - |
| KAK2188807.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2188808.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2188809.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| KAK2188810.1 | BUCENTAUR RELATED |
| KAK2188811.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2188812.1 | - |
| KAK2188813.1 | |
| KAK2188814.1 | |
| KAK2188815.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 |
| KAK2188736.1 | |
| KAK2188737.1 | |
| KAK2188738.1 | BCL-2 RELATED |
| KAK2188739.1 | VWFA DOMAIN-CONTAINING PROTEIN |
| KAK2188740.1 | NADH-UBIQUINONE OXIDOREDUCTASE AGGG SUBUNIT |
| KAK2188741.1 | |
| KAK2188742.1 | |
| KAK2188743.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| KAK2188744.1 | CYTOKINE RECEPTOR |
| KAK2188745.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2188746.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2188747.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2188748.1 | |
| KAK2188749.1 | |
| KAK2188750.1 | VACUOLAR PROTEIN SORTING VPS16 |
| KAK2188751.1 | RE42071P |
| KAK2188752.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| KAK2188753.1 | |
| KAK2188754.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| KAK2188755.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| KAK2188756.1 | |
| KAK2188757.1 | AROMATIC AMINO ACID HYDROXYLASE |
| KAK2188758.1 | ZINC FINGER PROTEIN |
| KAK2188759.1 | NADPH OXIDASE |
| KAK2188760.1 | |
| KAK2188761.1 | |
| KAK2188762.1 | TAXILIN |
| KAK2188763.1 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| KAK2188764.1 | |
| KAK2188765.1 | |
| KAK2188766.1 | |
| KAK2188767.1 | INHIBITOR OF APOPTOSIS |
| KAK2188768.1 | UNCHARACTERIZED |
| KAK2188769.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| KAK2188770.1 | AMINO ACID TRANSPORTER |
| KAK2188771.1 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR |
| KAK2188772.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| KAK2188773.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
