Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2189098.1 | REVERSE TRANSCRIPTASES |
| KAK2189099.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2189100.1 | ARYLSULFATASE |
| KAK2189101.1 | ARYLSULFATASE |
| KAK2189102.1 | INTEGRATOR COMPLEX SUBUNIT 5 |
| KAK2189103.1 | TYROSINE-PROTEIN KINASE |
| KAK2189104.1 | MITOGUARDIN |
| KAK2189105.1 | |
| KAK2189106.1 | TUBULIN POLYGLUTAMYLASE |
| KAK2189107.1 | |
| KAK2189108.1 | CONTACTIN 5 |
| KAK2189109.1 | CHROMOSOME 1 OPEN READING FRAME 112 |
| KAK2189110.1 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19 |
| KAK2189111.1 | 6-PHOSPHOGLUCONOLACTONASE |
| KAK2189112.1 | |
| KAK2189113.1 | |
| KAK2189114.1 | |
| KAK2189115.1 | |
| KAK2189116.1 | |
| KAK2189117.1 | |
| KAK2189118.1 | RIKEN CDNA 4933430I17 GENE |
| KAK2189119.1 | |
| KAK2189120.1 | |
| KAK2189121.1 | TRYPSIN-RELATED |
| KAK2189122.1 | ACROSIN-RELATED |
| KAK2189123.1 | ACROSIN-RELATED |
| KAK2189124.1 | |
| KAK2189125.1 | OVOCHYMASE-RELATED |
| KAK2189126.1 | DNA REPAIR PROTEIN XRCC2 |
| KAK2189127.1 | |
| KAK2189128.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2189129.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| KAK2189130.1 | |
| KAK2189131.1 | LIM/HOMEOBOX PROTEIN LHX |
| KAK2189132.1 | LIM/HOMEOBOX PROTEIN LHX |
| KAK2189133.1 | LIM/HOMEOBOX PROTEIN LHX |
| KAK2189134.1 | |
| KAK2189135.1 | |
| KAK2189136.1 | LIM/HOMEOBOX PROTEIN LHX |
| KAK2189137.1 | |
| KAK2189138.1 | - |
| KAK2194291.1 | |
| KAK2194292.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2194293.1 | REVERSE TRANSCRIPTASES |
| KAK2194294.1 | PROTEIN CBG16200 |
| KAK2194295.1 | SI:DKEY-16J16.4 |
| KAK2194296.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2194297.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| KAK2194298.1 | ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1C |
| KAK2194299.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
