Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2189175.1 | |
| KAK2189176.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2189177.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2189178.1 | BUCENTAUR RELATED |
| KAK2189179.1 | |
| KAK2189054.1 | CALICYLIN BINDING PROTEIN |
| KAK2189053.1 | |
| KAK2189055.1 | |
| KAK2189056.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2189057.1 | |
| KAK2189058.1 | |
| KAK2189059.1 | BUCENTAUR RELATED |
| KAK2189060.1 | |
| KAK2189061.1 | |
| KAK2189062.1 | |
| KAK2189063.1 | |
| KAK2189064.1 | RIBOSOMAL PROTEIN S6 KINASE |
| KAK2189065.1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
| KAK2189066.1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
| KAK2189067.1 | |
| KAK2189068.1 | SARCOSINE DEHYDROGENASE-RELATED |
| KAK2189069.1 | REVERSE TRANSCRIPTASES |
| KAK2189070.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| KAK2189071.1 | |
| KAK2189072.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
| KAK2189073.1 | REVERSE TRANSCRIPTASES |
| KAK2189074.1 | |
| KAK2189075.1 | REVERSE TRANSCRIPTASES |
| KAK2189076.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2189077.1 | MCG48959-RELATED |
| KAK2189078.1 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 |
| KAK2189079.1 | - |
| KAK2189080.1 | BUCENTAUR RELATED |
| KAK2189081.1 | |
| KAK2189082.1 | |
| KAK2189083.1 | CONTACTIN 5 |
| KAK2189084.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2189085.1 | |
| KAK2189086.1 | |
| KAK2189087.1 | |
| KAK2189088.1 | |
| KAK2189089.1 | BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2 |
| KAK2189090.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| KAK2189091.1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| KAK2189092.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| KAK2189093.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED |
| KAK2189094.1 | E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 |
| KAK2189095.1 | RAB6-INTERACTING PROTEIN GORAB |
| KAK2189096.1 | ATP-DEPENDENT RNA HELICASE |
| KAK2189097.1 | SURFEIT LOCUS PROTEIN |
