About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2188996.1ARYLSULFATASE FAMILY MEMBER
KAK2188997.1UNCHARACTERIZED
KAK2188998.1NUCLEAR HORMONE RECEPTOR
KAK2188999.1
KAK2189000.1TRANSMEMBRANE PROTEIN 42
KAK2189001.1ER MEMBRANE PROTEIN COMPLEX
KAK2189002.1KINESIN-LIKE PROTEIN KIN-12D
KAK2189003.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2189004.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
KAK2189005.1HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER
KAK2189006.1
KAK2189007.1
KAK2188912.1
KAK2188913.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188914.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188915.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188916.1TRANSFERASE, PUTATIVE-RELATED
KAK2188917.1
KAK2188918.1
KAK2188919.1ES-2 PROTEIN - RELATED
KAK2188920.1
KAK2188921.1
KAK2188922.1
KAK2188923.1NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3
KAK2188924.1UNCHARACTERIZED
KAK2188925.1LD33804P
KAK2188926.1RAB GDP/GTP EXCHANGE FACTOR
KAK2188927.1
KAK2188928.1
KAK2188929.1FMRFAMIDE RECEPTOR-RELATED
KAK2188930.1FORKHEAD BOX PROTEIN
KAK2188931.1CYSTEINE DESULFURYLASE FAMILY MEMBER
KAK2188932.1LD33804P
KAK2188933.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188934.1BUCENTAUR RELATED
KAK2188935.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2188936.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188937.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2188938.1CALBINDIN
KAK2188939.1PROTEIN CBG26694
KAK2188940.1PROTEIN CBG26694
KAK2188941.1
KAK2188942.139S RIBOSOMAL PROTEIN L36, MITOCHONDRIAL
KAK2188943.1PROTEIN PHOSPHATASE 2C
KAK2188944.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188945.1-
KAK2188946.1RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
KAK2188947.1
KAK2188948.1-
KAK2188949.1-
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