Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2188950.1 | RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C |
| KAK2188951.1 | |
| KAK2188952.1 | REVERSE TRANSCRIPTASES |
| KAK2188953.1 | PRESEQUENCE PROTEASE |
| KAK2188954.1 | NUCLEOLAR PROTEIN 9 |
| KAK2188955.1 | ATP-DEPENDENT PROTEASE |
| KAK2188956.1 | NULP1-RELATED |
| KAK2188957.1 | UNCHARACTERIZED |
| KAK2188958.1 | CENTROMERE PROTEIN T |
| KAK2188959.1 | NUCLEAR TRANSPORT FACTOR 2 |
| KAK2188960.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| KAK2188961.1 | HYPOTHETICAL PROTEIN LOC100359752 |
| KAK2188962.1 | ZINC FINGER PROTEIN-RELATED |
| KAK2188963.1 | GATOR COMPLEX PROTEIN WDR59 |
| KAK2188964.1 | F-BOX ONLY PROTEIN 4 |
| KAK2188965.1 | |
| KAK2188966.1 | BUCENTAUR RELATED |
| KAK2188967.1 | |
| KAK2188968.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| KAK2188969.1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
| KAK2188970.1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
| KAK2188971.1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| KAK2188972.1 | RING FINGER AND SRY DOMAIN-CONTAINING |
| KAK2188973.1 | RING FINGER AND SRY DOMAIN-CONTAINING |
| KAK2188974.1 | LOC361192 |
| KAK2188975.1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| KAK2188976.1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| KAK2188977.1 | UNCHARACTERIZED |
| KAK2188978.1 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
| KAK2188979.1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| KAK2188980.1 | |
| KAK2188981.1 | |
| KAK2188886.1 | |
| KAK2188887.1 | |
| KAK2188888.1 | REVERSE TRANSCRIPTASES |
| KAK2188889.1 | BUCENTAUR RELATED |
| KAK2188890.1 | |
| KAK2188891.1 | TRANSDUCIN BETA-LIKE 3 |
| KAK2188892.1 | FRINGE-RELATED |
| KAK2188893.1 | SYNTAXIN |
| KAK2188894.1 | NETRIN/LAMININ-RELATED |
| KAK2188895.1 | NETRIN/LAMININ-RELATED |
| KAK2188896.1 | RIBONUCLEIC ACID BINDING PROTEIN S1 |
| KAK2188897.1 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
| KAK2188898.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| KAK2188899.1 | TRANSDUCER OF ERBB2 TOB |
| KAK2188900.1 | |
| KAK2188901.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2188902.1 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN |
| KAK2188903.1 |
