About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

<< First 94 95 96 97 98 99 100 101 102 103 Forward> Last>>        633 pages in total

Gene IDDescription
KAK2189295.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2189296.1
KAK2189297.1NUCLEAR PORE COMPLEX PROTEIN NUP
KAK2189298.1MYOSIN HEAVY CHAIN, NON-MUSCLE
KAK2189299.1FAM187
KAK2189300.1EH DOMAIN
KAK2189301.1GLUTATHIONE S-TRANSFERASE
KAK2189302.1NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
KAK2189303.1SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA
KAK2189304.1PHOSPHOENOLPYRUVATE CARBOXYLASE
KAK2189305.1
KAK2189306.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
KAK2189307.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
KAK2189308.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
KAK2189309.1
KAK2189310.1EXPRESSED PROTEIN
KAK2189311.1PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
KAK2189312.1
KAK2189313.1THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
KAK2189314.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2189315.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
KAK2189316.1
KAK2189317.1
KAK2189318.1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
KAK2189319.1UNCHARACTERIZED
KAK2189320.1NUCLEOTIDE KINASE
KAK2189321.1CYSTEINE PROTEASE ATG4
KAK2189322.1CELL CYCLE CHECKPOINT PROTEIN RAD17
KAK2189323.1AGAP008170-PA
KAK2189324.1CELL CYCLE CHECKPOINT PROTEIN RAD17
KAK2189325.1UBIQUITIN-CONJUGATING ENZYME E2
KAK2189326.1FERREDOXIN/ADRENODOXIN
KAK2189327.1GOLGIN- RELATED
KAK2189328.1GOLGIN- RELATED
KAK2189329.1AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
KAK2189330.1SERINE/THREONINE PROTEIN KINASE
KAK2189331.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
KAK2189332.1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
KAK2189333.1NUCLEAR RECEPTOR COACTIVATOR 6
KAK2189334.1PEROXISOMAL MEMBRANE PROTEIN PEX13
KAK2189335.140S RIBOSOMAL PROTEIN S7
KAK2189336.1RIBONUCLEASE H1
KAK2189337.1ELONGIN-C
KAK2189338.1NEURENSIN 1-RELATED
KAK2189339.1PROTEIN STPG4
KAK2189340.1RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
KAK2189341.1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
KAK2189342.1DEK PROTEIN
KAK2189343.1HISTONE DEACETYLASE HDAC1-RELATED
KAK2189344.1
TOP